HL_8JDM_027

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8JDM|1|D|U|1596, 8JDM|1|D|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_027 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0658

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8JDM|1|D|A|1593
8JDM|1|D|C|1594
8JDM|1|D|G|1595
8JDM|1|D|U|1596
8JDM|1|D|G|1597
8JDM|1|D|C|1598
8JDM|1|D|A|1599
8JDM|1|D|A|1600
8JDM|1|D|A|1601
8JDM|1|D|U|1602

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17

Chain o

60S ribosomal protein L37