HL_8JDM_047

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8JDM|1|D|C|2794, 8JDM|1|D|G|2796, 8JDM|1|D|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_047 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.0909

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8JDM|1|D|C|2792
8JDM|1|D|G|2793
8JDM|1|D|C|2794
8JDM|1|D|A|2795
8JDM|1|D|G|2796
8JDM|1|D|C|2797
8JDM|1|D|A|2798
8JDM|1|D|G|2799

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain U

60S ribosomal protein L17

Chain o

60S ribosomal protein L37

Chain q

60S ribosomal protein L39