HL_8JDM_091

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CCGACCCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_091 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3686

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8JDM|1|w|C|497
8JDM|1|w|C|498
8JDM|1|w|G|499
8JDM|1|w|A|500
8JDM|1|w|C|501
8JDM|1|w|C|502
8JDM|1|w|C|503
8JDM|1|w|G|504
8JDM|1|w|G|505

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain AK

40S ribosomal protein S24