HL_8JDM_104

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8JDM|1|w|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDM_104 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2257

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8JDM|1|w|A|1295
8JDM|1|w|U|1296
8JDM|1|w|U|1297
8JDM|1|w|G|1298
8JDM|1|w|A|1299
8JDM|1|w|U|1300
8JDM|1|w|A|1301
8JDM|1|w|G|1302
8JDM|1|w|C|1303
8JDM|1|w|U|1304

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15