HL_8JSG_018

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

8JSG|1|g|A|845

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSG_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1224

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JSG|1|g|C|840
8JSG|1|g|C|841
8JSG|1|g|U|842
8JSG|1|g|U|843
8JSG|1|g|G|844
8JSG|1|g|A|845
8JSG|1|g|G|846

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 1

Small ribosomal subunit protein bS18