HL_8JSG_024

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSG_024 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.2573

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8JSG|1|g|U|1076
8JSG|1|g|G|1077
8JSG|1|g|U|1078
8JSG|1|g|G|1079
8JSG|1|g|A|1080
8JSG|1|g|A|1081

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain j

Small ribosomal subunit protein uS2

Chain k

Small ribosomal subunit protein uS5