HL_8JSG_026

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8JSG|1|g|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JSG_026 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3871

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8JSG|1|g|G|1134
8JSG|1|g|U|1135
8JSG|1|g|C|1136
8JSG|1|g|C|1137
8JSG|1|g|G|1138
8JSG|1|g|G|1139
8JSG|1|g|C|1140

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain o

Small ribosomal subunit protein uS9