HL_8K2A_022

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8K2A|1|L1|A|830, 8K2A|1|L1|C|831, 8K2A|1|L1|C|832, 8K2A|1|L1|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2A_022 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.1012

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8K2A|1|L1|U|827
8K2A|1|L1|U|828
8K2A|1|L1|U|829
8K2A|1|L1|A|830
8K2A|1|L1|C|831
8K2A|1|L1|C|832
8K2A|1|L1|A|833
8K2A|1|L1|A|834
8K2A|1|L1|A|835
8K2A|1|L1|A|836
8K2A|1|L1|A|837

Current chains

Chain L1

16S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m