HL_8K2B_005
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACUAACCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2B_005 not in the Motif Atlas
- Homologous match to HL_7RQB_017
- Geometric discrepancy: 0.4248
- The information below is about HL_7RQB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2B|1|L1|G|161
8K2B|1|L1|A|162
8K2B|1|L1|C|163
8K2B|1|L1|U|164
8K2B|1|L1|A|165
8K2B|1|L1|A|166
8K2B|1|L1|C|167
8K2B|1|L1|C|168
8K2B|1|L1|C|169
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LM
- Large ribosomal subunit protein uL13m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain LV
- 39S ribosomal protein L22, mitochondrial
- Chain Lp
- Large ribosomal subunit protein mL42
- Chain Lq
- Large ribosomal subunit protein mL43
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