HL_8K2B_010

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

8K2B|1|L1|A|321, 8K2B|1|L1|A|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_010 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2592

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8K2B|1|L1|G|318
8K2B|1|L1|C|319
8K2B|1|L1|G|320
8K2B|1|L1|A|321
8K2B|1|L1|C|322
8K2B|1|L1|A|323
8K2B|1|L1|A|324
8K2B|1|L1|A|325
8K2B|1|L1|C|326

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m