HL_8K2B_012
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AACCAAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2B_012 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.2926
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40612.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
8K2B|1|L1|A|394
8K2B|1|L1|A|395
8K2B|1|L1|C|396
8K2B|1|L1|C|397
8K2B|1|L1|A|402
8K2B|1|L1|A|403
8K2B|1|L1|A|404
8K2B|1|L1|U|405
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LP
- Large ribosomal subunit protein uL16m
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain Ll
- Large ribosomal subunit protein mL38
- Chain Lv
- Large ribosomal subunit protein mL48
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