HL_8K2B_015

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

8K2B|1|L1|A|511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_015 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1735

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8K2B|1|L1|C|505
8K2B|1|L1|C|506
8K2B|1|L1|U|507
8K2B|1|L1|A|508
8K2B|1|L1|A|509
8K2B|1|L1|A|510
8K2B|1|L1|A|511
8K2B|1|L1|G|512
8K2B|1|L1|C|513
8K2B|1|L1|A|514
8K2B|1|L1|G|515

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain LK

Large ribosomal subunit protein uL11m