HL_8K2B_022

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8K2B|1|L1|A|830, 8K2B|1|L1|C|831, 8K2B|1|L1|C|832, 8K2B|1|L1|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_022 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0919

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8K2B|1|L1|U|827
8K2B|1|L1|U|828
8K2B|1|L1|U|829
8K2B|1|L1|A|830
8K2B|1|L1|C|831
8K2B|1|L1|C|832
8K2B|1|L1|A|833
8K2B|1|L1|A|834
8K2B|1|L1|A|835
8K2B|1|L1|A|836
8K2B|1|L1|A|837

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m