HL_8K2B_029

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

8K2B|1|L1|G|1144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_029 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1058

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8K2B|1|L1|U|1142
8K2B|1|L1|U|1143
8K2B|1|L1|G|1144
8K2B|1|L1|G|1145
8K2B|1|L1|G|1146
8K2B|1|L1|G|1147
8K2B|1|L1|C|1148
8K2B|1|L1|G|1149
8K2B|1|L1|A|1150

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL16m

Chain La

Large ribosomal subunit protein bL27m