HL_8K2B_034

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

8K2B|1|L1|G|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2B_034 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1308

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8K2B|1|L1|U|1345
8K2B|1|L1|G|1346
8K2B|1|L1|C|1347
8K2B|1|L1|A|1348
8K2B|1|L1|G|1349
8K2B|1|L1|C|1350
8K2B|1|L1|C|1351
8K2B|1|L1|G|1352

Current chains

Chain L1

16s rRNA

Nearby chains

Chain Lj

Large ribosomal subunit protein bL36m