HL_8K2C_064

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8K2C|1|L5|A|4214, 8K2C|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2C_064 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1248

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8K2C|1|L5|U|4210
8K2C|1|L5|C|4211
8K2C|1|L5|A|4212
8K2C|1|L5|A|4213
8K2C|1|L5|A|4214
8K2C|1|L5|C|4215
8K2C|1|L5|G|4216
8K2C|1|L5|G|4217
8K2C|1|L5|U|4218
8K2C|1|L5|A|4219
8K2C|1|L5|A|4220
8K2C|1|L5|C|4221
8K2C|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29