HL_8K2C_102

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8K2C|1|S2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2C_102 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1007

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8K2C|1|S2|U|820
8K2C|1|S2|G|821
8K2C|1|S2|U|822
8K2C|1|S2|U|823
8K2C|1|S2|C|824
8K2C|1|S2|A|825
8K2C|1|S2|A|826
8K2C|1|S2|A|827
8K2C|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24