HL_8K2C_105
3D structure
- PDB id
- 8K2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2C_105 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.082
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8K2C|1|S2|A|957
8K2C|1|S2|G|958
8K2C|1|S2|G|959
8K2C|1|S2|U|960
8K2C|1|S2|G|961
8K2C|1|S2|A|962
8K2C|1|S2|A|963
8K2C|1|S2|A|964
8K2C|1|S2|U|965
8K2C|1|S2|U|966
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SO
- 40S ribosomal protein S14
Coloring options: