HL_8K2D_012

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8K2D|1|C1|U|545, 8K2D|1|C1|C|546, 8K2D|1|C1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_012 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.5251

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|C|543
8K2D|1|C1|C|544
8K2D|1|C1|U|545
8K2D|1|C1|C|546
8K2D|1|C1|G|547
8K2D|1|C1|G|548

Current chains

Chain C1

23S rRNA

Nearby chains