HL_8K2D_022

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8K2D|1|C1|C|959, 8K2D|1|C1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0445

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8K2D|1|C1|C|958
8K2D|1|C1|C|959
8K2D|1|C1|U|960
8K2D|1|C1|C|961
8K2D|1|C1|A|962
8K2D|1|C1|G|963

Current chains

Chain C1

23S rRNA

Nearby chains

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

Large ribosomal subunit protein eL42A