HL_8K2D_023

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8K2D|1|C1|A|1025, 8K2D|1|C1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_023 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3727

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8K2D|1|C1|C|1023
8K2D|1|C1|G|1024
8K2D|1|C1|A|1025
8K2D|1|C1|A|1026
8K2D|1|C1|A|1027
8K2D|1|C1|U|1028
8K2D|1|C1|G|1029

Current chains

Chain C1

23S rRNA

Nearby chains

Chain CS

Suppressor protein STM1

Chain LJ

Large ribosomal subunit protein uL5A

Chain SP

Small ribosomal subunit protein uS19