HL_8K2D_038

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_038 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1207

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8K2D|1|C1|G|1719
8K2D|1|C1|U|1720
8K2D|1|C1|U|1721
8K2D|1|C1|U|1722
8K2D|1|C1|A|1723
8K2D|1|C1|U|1724
8K2D|1|C1|C|1725

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain Lp

Large ribosomal subunit protein eL43A