HL_8K2D_056
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8K2D|1|C1|A|2637, 8K2D|1|C1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0822
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8K2D|1|C1|U|2633
8K2D|1|C1|U|2634
8K2D|1|C1|A|2635
8K2D|1|C1|A|2636
8K2D|1|C1|A|2637
8K2D|1|C1|C|2638
8K2D|1|C1|G|2639
8K2D|1|C1|A|2640
8K2D|1|C1|U|2641
8K2D|1|C1|A|2642
8K2D|1|C1|A|2643
8K2D|1|C1|C|2644
8K2D|1|C1|G|2645
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain Lb
- Large ribosomal subunit protein eL29
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