HL_8K2D_067

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_067 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1444

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8K2D|1|C1|U|3068
8K2D|1|C1|G|3069
8K2D|1|C1|A|3070
8K2D|1|C1|U|3071
8K2D|1|C1|C|3072
8K2D|1|C1|A|3073

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain LU

Large ribosomal subunit protein eL22A

Chain Ld

Large ribosomal subunit protein eL31A