HL_8K2D_080

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8K2D|1|C2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_080 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.1246

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8K2D|1|C2|G|330
8K2D|1|C2|A|331
8K2D|1|C2|U|332
8K2D|1|C2|A|333
8K2D|1|C2|G|334
8K2D|1|C2|U|335
8K2D|1|C2|G|336
8K2D|1|C2|G|337
8K2D|1|C2|C|338

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

Small ribosomal subunit protein uS17A