HL_8K2D_083

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8K2D|1|C2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_083 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1358

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8K2D|1|C2|C|414
8K2D|1|C2|C|415
8K2D|1|C2|A|416
8K2D|1|C2|A|417
8K2D|1|C2|G|418
8K2D|1|C2|G|419

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LV

Large ribosomal subunit protein uL14A

Chain SG

40S ribosomal protein S6-A