HL_8K2D_098
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8K2D|1|C2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_098 not in the Motif Atlas
- Homologous match to HL_8C3A_217
- Geometric discrepancy: 0.1438
- The information below is about HL_8C3A_217
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8K2D|1|C2|G|1188
8K2D|1|C2|A|1189
8K2D|1|C2|C|1190
8K2D|1|C2|U|1191
8K2D|1|C2|C|1192
8K2D|1|C2|A|1193
8K2D|1|C2|A|1194
8K2D|1|C2|C|1195
8K2D|1|C2|A|1196
8K2D|1|C2|C|1197
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CS
- Suppressor protein STM1
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
Coloring options: