HL_8K2D_114

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

8K2D|1|C1|U|545, 8K2D|1|C1|C|546, 8K2D|1|C1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_114 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.386

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8K2D|1|C1|G|542
8K2D|1|C1|C|543
8K2D|1|C1|C|544
8K2D|1|C1|U|545
8K2D|1|C1|C|546
8K2D|1|C1|G|547
8K2D|1|C1|G|548
8K2D|1|C1|U|549

Current chains

Chain C1

23S rRNA

Nearby chains