HL_8K3O_033

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

8K3O|1|A|U|965, 8K3O|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K3O_033 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1932

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8K3O|1|A|G|963
8K3O|1|A|A|964
8K3O|1|A|U|965
8K3O|1|A|G|966
8K3O|1|A|C|967
8K3O|1|A|A|968
8K3O|1|A|A|969
8K3O|1|A|C|970
8K3O|1|A|G|971
8K3O|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10