HL_8K82_020

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8K82|1|C1|U|879, 8K82|1|C1|A|883, 8K82|1|C1|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0741

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|A|876
8K82|1|C1|C|877
8K82|1|C1|G|878
8K82|1|C1|U|879
8K82|1|C1|G|880
8K82|1|C1|C|881
8K82|1|C1|A|882
8K82|1|C1|A|883
8K82|1|C1|A|884
8K82|1|C1|U|885

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22A

Chain Lj

Large ribosomal subunit protein eL37A