HL_8K82_028

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.471

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8K82|1|C1|U|1267
8K82|1|C1|G|1268
8K82|1|C1|U|1269
8K82|1|C1|A|1270
8K82|1|C1|A|1271
8K82|1|C1|C|1272
8K82|1|C1|A|1273
8K82|1|C1|A|1274

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein uL11A

Chain P0

Large ribosomal subunit protein uL10