HL_8K82_046

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8K82|1|C1|A|2138, 8K82|1|C1|A|2139, 8K82|1|C1|U|2140, 8K82|1|C1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0853

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8K82|1|C1|U|2135
8K82|1|C1|C|2136
8K82|1|C1|U|2137
8K82|1|C1|A|2138
8K82|1|C1|A|2139
8K82|1|C1|U|2140
8K82|1|C1|U|2141
8K82|1|C1|A|2142
8K82|1|C1|A|2143
8K82|1|C1|A|2144
8K82|1|C1|A|2145

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain Lj

Large ribosomal subunit protein eL37A