HL_8K82_049

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8K82|1|C1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1122

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8K82|1|C1|G|2253
8K82|1|C1|U|2254
8K82|1|C1|A|2255
8K82|1|C1|A|2256
8K82|1|C1|C|2257
8K82|1|C1|U|2258
8K82|1|C1|A|2259
8K82|1|C1|U|2260
8K82|1|C1|G|2261
8K82|1|C1|A|2262
8K82|1|C1|C|2263

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain C5

Transfer RNA; tRNA

Chain Se

40S ribosomal protein S30-A