HL_8K82_050
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 8K82|1|C1|U|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_050 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.0613
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8K82|1|C1|U|2292
8K82|1|C1|C|2293
8K82|1|C1|U|2294
8K82|1|C1|A|2295
8K82|1|C1|A|2296
8K82|1|C1|U|2297
8K82|1|C1|U|2298
8K82|1|C1|A|2299
8K82|1|C1|G|2300
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LV
- Large ribosomal subunit protein uL14A
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