HL_8K82_093
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_093 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.0773
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8K82|1|C2|A|900
8K82|1|C2|G|901
8K82|1|C2|G|902
8K82|1|C2|U|903
8K82|1|C2|G|904
8K82|1|C2|A|905
8K82|1|C2|A|906
8K82|1|C2|A|907
8K82|1|C2|U|908
8K82|1|C2|U|909
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CN
- General negative regulator of transcription subunit 5
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SO
- 40S ribosomal protein S14-A
- Chain Sa
- Small ribosomal subunit protein eS26B
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