HL_8K82_100

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8K82|1|C2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_100 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1829

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8K82|1|C2|A|1238
8K82|1|C2|U|1239
8K82|1|C2|U|1240
8K82|1|C2|G|1241
8K82|1|C2|A|1242
8K82|1|C2|G|1243
8K82|1|C2|A|1244
8K82|1|C2|G|1245
8K82|1|C2|C|1246
8K82|1|C2|U|1247

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14A

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein