HL_8KIE_004

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUCG

Length

4 nucleotides

Bulged bases

8KIE|1|a|U|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8KIE_004 not in the Motif Atlas

Homologous match to HL_5J7L_176

Geometric discrepancy: 0.5439

The information below is about HL_5J7L_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8KIE|1|a|C|1849
8KIE|1|a|U|1850
8KIE|1|a|C|1851
8KIE|1|a|G|1852

Current chains

Chain a

23S rRNA (partial)

Nearby chains