HL_8OEQ_048

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8OEQ|1|1|U|2276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_048 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0486

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OEQ|1|1|U|2270
8OEQ|1|1|C|2271
8OEQ|1|1|U|2272
8OEQ|1|1|A|2273
8OEQ|1|1|A|2274
8OEQ|1|1|U|2275
8OEQ|1|1|U|2276
8OEQ|1|1|A|2277
8OEQ|1|1|G|2278

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain B

Small subunit ribosomal RNA; SSU rRNA