HL_8OEQ_115
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8OEQ|1|AS|C|1842, 8OEQ|1|AS|G|1844, 8OEQ|1|AS|A|1846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_115 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.0698
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8OEQ|1|AS|C|1840
8OEQ|1|AS|G|1841
8OEQ|1|AS|C|1842
8OEQ|1|AS|A|1843
8OEQ|1|AS|G|1844
8OEQ|1|AS|C|1845
8OEQ|1|AS|A|1846
8OEQ|1|AS|G|1847
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BK
- Ribosomal protein L22
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
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