HL_8OEQ_119
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|2116, 8OEQ|1|AS|A|2117, 8OEQ|1|AS|U|2118, 8OEQ|1|AS|A|2122
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_119 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.048
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8OEQ|1|AS|U|2113
8OEQ|1|AS|C|2114
8OEQ|1|AS|U|2115
8OEQ|1|AS|A|2116
8OEQ|1|AS|A|2117
8OEQ|1|AS|U|2118
8OEQ|1|AS|U|2119
8OEQ|1|AS|A|2120
8OEQ|1|AS|A|2121
8OEQ|1|AS|A|2122
8OEQ|1|AS|A|2123
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain CE
- 60S ribosomal protein L37-B
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