HL_8OEQ_129
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|2609, 8OEQ|1|AS|C|2616
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_129 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.0522
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8OEQ|1|AS|U|2605
8OEQ|1|AS|U|2606
8OEQ|1|AS|A|2607
8OEQ|1|AS|A|2608
8OEQ|1|AS|A|2609
8OEQ|1|AS|C|2610
8OEQ|1|AS|G|2611
8OEQ|1|AS|A|2612
8OEQ|1|AS|U|2613
8OEQ|1|AS|A|2614
8OEQ|1|AS|A|2615
8OEQ|1|AS|C|2616
8OEQ|1|AS|G|2617
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain BE
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L21-A
- Chain BW
- 60S ribosomal protein L29
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