HL_8OEQ_136

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8OEQ|1|AS|G|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_136 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0604

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OEQ|1|AS|A|2869
8OEQ|1|AS|G|2870
8OEQ|1|AS|C|2871
8OEQ|1|AS|A|2872
8OEQ|1|AS|G|2873
8OEQ|1|AS|A|2874
8OEQ|1|AS|A|2875
8OEQ|1|AS|U|2876

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain CH

60S ribosomal protein L40-B