HL_8OEQ_161
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_161 not in the Motif Atlas
- Homologous match to HL_8C3A_200
- Geometric discrepancy: 0.0805
- The information below is about HL_8C3A_200
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_02837.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8OEQ|1|B|U|366
8OEQ|1|B|A|367
8OEQ|1|B|A|368
8OEQ|1|B|G|369
8OEQ|1|B|G|370
8OEQ|1|B|G|371
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein S5
- Chain L
- Ribosomal protein S4
- Chain N
- 40S ribosomal protein S11A
- Chain Y
- 40S ribosomal protein S22-A
- Chain Z
- Ribosomal protein S23 (S12)
Coloring options: