HL_8OEQ_170

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_170 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.058

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OEQ|1|B|A|885
8OEQ|1|B|G|886
8OEQ|1|B|G|887
8OEQ|1|B|U|888
8OEQ|1|B|G|889
8OEQ|1|B|A|890
8OEQ|1|B|A|891
8OEQ|1|B|A|892
8OEQ|1|B|U|893
8OEQ|1|B|U|894

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S14-A

Chain c

40S ribosomal protein S26