HL_8OEQ_172

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8OEQ|1|B|U|989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_172 not in the Motif Atlas

Homologous match to HL_8C3A_213

Geometric discrepancy: 0.0878

The information below is about HL_8C3A_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8OEQ|1|B|G|982
8OEQ|1|B|A|983
8OEQ|1|B|U|984
8OEQ|1|B|C|985
8OEQ|1|B|A|986
8OEQ|1|B|G|987
8OEQ|1|B|A|988
8OEQ|1|B|U|989
8OEQ|1|B|A|990
8OEQ|1|B|C|991
8OEQ|1|B|C|992

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S14-A

Chain c

40S ribosomal protein S26