HL_8OEQ_195
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8OEQ|1|CM|C|400, 8OEQ|1|CM|G|401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_195 not in the Motif Atlas
- Homologous match to HL_8P9A_199
- Geometric discrepancy: 0.0796
- The information below is about HL_8P9A_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8OEQ|1|CM|C|391
8OEQ|1|CM|C|392
8OEQ|1|CM|U|393
8OEQ|1|CM|G|394
8OEQ|1|CM|A|395
8OEQ|1|CM|G|396
8OEQ|1|CM|A|397
8OEQ|1|CM|A|398
8OEQ|1|CM|A|399
8OEQ|1|CM|C|400
8OEQ|1|CM|G|401
8OEQ|1|CM|G|402
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CT
- 40S ribosomal protein S6
- Chain CV
- 40S ribosomal protein S8
- Chain DL
- 40S ribosomal protein S24
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