HL_8OEQ_198

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_198 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.0423

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OEQ|1|CM|A|518
8OEQ|1|CM|A|519
8OEQ|1|CM|U|520
8OEQ|1|CM|G|521
8OEQ|1|CM|U|522
8OEQ|1|CM|A|523
8OEQ|1|CM|A|524
8OEQ|1|CM|A|525
8OEQ|1|CM|U|526
8OEQ|1|CM|A|527
8OEQ|1|CM|C|528
8OEQ|1|CM|C|529
8OEQ|1|CM|U|530

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24