HL_8OEQ_211

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8OEQ|1|CM|G|1228, 8OEQ|1|CM|G|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_211 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.0825

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8OEQ|1|CM|A|1223
8OEQ|1|CM|U|1224
8OEQ|1|CM|U|1225
8OEQ|1|CM|G|1226
8OEQ|1|CM|A|1227
8OEQ|1|CM|G|1228
8OEQ|1|CM|A|1229
8OEQ|1|CM|G|1230
8OEQ|1|CM|C|1231
8OEQ|1|CM|U|1232

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain DC

40S ribosomal protein S15

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein