HL_8OH6_020
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8OH6|1|1|U|875, 8OH6|1|1|A|879, 8OH6|1|1|A|880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.049
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8OH6|1|1|A|872
8OH6|1|1|C|873
8OH6|1|1|G|874
8OH6|1|1|U|875
8OH6|1|1|G|876
8OH6|1|1|C|877
8OH6|1|1|A|878
8OH6|1|1|A|879
8OH6|1|1|A|880
8OH6|1|1|U|881
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AK
- 60S ribosomal protein L37-B
- Chain k
- 60S ribosomal protein L3
- Chain x
- Ribosomal protein L22
Coloring options: