HL_8OH6_028

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2054

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OH6|1|1|U|1263
8OH6|1|1|G|1264
8OH6|1|1|U|1265
8OH6|1|1|A|1266
8OH6|1|1|A|1267
8OH6|1|1|C|1268
8OH6|1|1|A|1269
8OH6|1|1|A|1270

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain AN

60S ribosomal protein L40-B